IL_4V6X_094

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_094 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2394

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

4V6X|1|A5|C|2589
4V6X|1|A5|G|2590
4V6X|1|A5|A|2591
4V6X|1|A5|U|2592
4V6X|1|A5|C|2593
*
4V6X|1|A5|G|2752
4V6X|1|A5|G|2753
4V6X|1|A5|G|2754
4V6X|1|A5|A|2755
4V6X|1|A5|G|2756

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein L8

Chain CZ

60S ribosomal protein L27

Chain Cg

60S ribosomal protein L34