IL_4V6X_111

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

4V6X|1|A5|A|3746, 4V6X|1|A5|A|3747

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_111 not in the Motif Atlas

Homologous match to IL_5TBW_085

Geometric discrepancy: 0.12

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4V6X|1|A5|U|3704
4V6X|1|A5|G|3705
*
4V6X|1|A5|U|3745
4V6X|1|A5|A|3746
4V6X|1|A5|A|3747
4V6X|1|A5|A|3748

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain B2

Small subunit ribosomal RNA; SSU rRNA

Chain CA

60S ribosomal protein L8