IL_4V6X_147
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_147 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.1851
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
4V6X|1|A5|C|4596
4V6X|1|A5|U|4597
4V6X|1|A5|C|4598
4V6X|1|A5|A|4599
4V6X|1|A5|G|4600
4V6X|1|A5|U|4601
4V6X|1|A5|A|4602
4V6X|1|A5|C|4603
*
4V6X|1|A5|G|4608
4V6X|1|A5|G|4609
4V6X|1|A5|A|4610
4V6X|1|A5|A|4611
4V6X|1|A5|C|4612
4V6X|1|A5|C|4613
4V6X|1|A5|G|4614
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain Az
- Elongation factor 2
- Chain CB
- 60S ribosomal protein L3
- Chain CH
- 60S ribosomal protein L9
- Chain CV
- 60S ribosomal protein L23
- Chain Cm
- 60S ribosomal protein L40
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