IL_4V6X_154

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_154 not in the Motif Atlas

Geometric match to IL_2IL9_001

Geometric discrepancy: 0.3713

The information below is about IL_2IL9_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_42334.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

3

Unit IDs

4V6X|1|A5|G|4743
4V6X|1|A5|A|4744
4V6X|1|A5|G|4745
4V6X|1|A5|C|4746
*
4V6X|1|A5|G|4954
4V6X|1|A5|A|4955
4V6X|1|A5|A|4956
4V6X|1|A5|C|4957

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain Cf

60S ribosomal protein L35a