IL_4V6X_189

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAUU*ACCUCGGG

Length

12 nucleotides

Bulged bases

4V6X|1|B2|U|305

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_189 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3265

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

4V6X|1|B2|C|216
4V6X|1|B2|A|217
4V6X|1|B2|U|218
4V6X|1|B2|U|219
*
4V6X|1|B2|A|302
4V6X|1|B2|C|303
4V6X|1|B2|C|304
4V6X|1|B2|U|305
4V6X|1|B2|C|306
4V6X|1|B2|G|307
4V6X|1|B2|G|308
4V6X|1|B2|G|309

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AI

40S ribosomal protein S8