IL_4V6X_199

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CCACUC*GGAG

Length

10 nucleotides

Bulged bases

4V6X|1|B2|G|507

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_199 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.1376

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V6X|1|B2|C|491
4V6X|1|B2|C|492
4V6X|1|B2|A|493
4V6X|1|B2|C|494
4V6X|1|B2|U|495
4V6X|1|B2|C|496
*
4V6X|1|B2|G|506
4V6X|1|B2|G|507
4V6X|1|B2|A|508
4V6X|1|B2|G|509

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AE

40S ribosomal protein S4, X isoform

Chain AY

40S ribosomal protein S24