IL_4V6X_205
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 4V6X|1|B2|A|628, 4V6X|1|B2|U|630
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_205 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1503
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V6X|1|B2|G|611
4V6X|1|B2|U|612
4V6X|1|B2|G|613
4V6X|1|B2|C|614
4V6X|1|B2|C|615
4V6X|1|B2|A|616
4V6X|1|B2|G|617
*
4V6X|1|B2|C|624
4V6X|1|B2|G|625
4V6X|1|B2|G|626
4V6X|1|B2|U|627
4V6X|1|B2|A|628
4V6X|1|B2|A|629
4V6X|1|B2|U|630
4V6X|1|B2|U|631
4V6X|1|B2|C|632
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AD
- 40S ribosomal protein S3
- Chain AX
- 40S ribosomal protein S23
- Chain Ae
- 40S ribosomal protein S30
- Chain Ah
- Plasminogen activator inhibitor 1 RNA-binding protein
- Chain Az
- Elongation factor 2
Coloring options: