IL_4V6X_221

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

GGCC*GAAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6X_221 not in the Motif Atlas

Geometric match to IL_4V88_430

Geometric discrepancy: 0.2114

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V6X|1|B2|G|928
4V6X|1|B2|G|929
4V6X|1|B2|C|930
4V6X|1|B2|C|931
*
4V6X|1|B2|G|1010
4V6X|1|B2|A|1011
4V6X|1|B2|A|1012
4V6X|1|B2|U|1013

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S3a

Chain AN

40S ribosomal protein S13

Chain Ab

40S ribosomal protein S27