IL_4V6X_234
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- CACCA*UCCCUG
- Length
- 11 nucleotides
- Bulged bases
- 4V6X|1|B2|C|1215, 4V6X|1|B2|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_234 not in the Motif Atlas
- Geometric match to IL_4V88_408
- Geometric discrepancy: 0.3879
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4V6X|1|B2|C|1213
4V6X|1|B2|A|1214
4V6X|1|B2|C|1215
4V6X|1|B2|C|1216
4V6X|1|B2|A|1217
*
4V6X|1|B2|U|1681
4V6X|1|B2|C|1682
4V6X|1|B2|C|1683
4V6X|1|B2|C|1684
4V6X|1|B2|U|1685
4V6X|1|B2|G|1686
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AF
- 40S ribosomal protein S5
- Chain AQ
- 40S ribosomal protein S16
- Chain Ac
- 40S ribosomal protein S28
- Chain BC
- Transfer RNA; tRNA
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