IL_4V6X_256
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GUGCCUACC*GUAACC
- Length
- 15 nucleotides
- Bulged bases
- 4V6X|1|B2|C|1554, 4V6X|1|B2|U|1555, 4V6X|1|B2|A|1580, 4V6X|1|B2|C|1581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V6X_256 not in the Motif Atlas
- Geometric match to IL_6CZR_161
- Geometric discrepancy: 0.3818
- The information below is about IL_6CZR_161
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_11344.1
- Basepair signature
- cWW-cSS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V6X|1|B2|G|1550
4V6X|1|B2|U|1551
4V6X|1|B2|G|1552
4V6X|1|B2|C|1553
4V6X|1|B2|C|1554
4V6X|1|B2|U|1555
4V6X|1|B2|A|1556
4V6X|1|B2|C|1557
4V6X|1|B2|C|1558
*
4V6X|1|B2|G|1577
4V6X|1|B2|U|1578
4V6X|1|B2|A|1579
4V6X|1|B2|A|1580
4V6X|1|B2|C|1581
4V6X|1|B2|C|1582
Current chains
- Chain B2
- 18S ribosomal RNA
Nearby chains
- Chain AD
- 40S ribosomal protein S3
- Chain AK
- 40S ribosomal protein S10
- Chain AU
- 40S ribosomal protein S20
- Chain Ad
- 40S ribosomal protein S29
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