IL_4V6Y_188

3D structure

PDB id

4V6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1a)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

4V6Y|1|AA|U|632

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V6Y_188 not in the Motif Atlas

Homologous match to IL_5J7L_030

Geometric discrepancy: 0.3052

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

4V6Y|1|AA|U|605
4V6Y|1|AA|G|606
4V6Y|1|AA|A|607
4V6Y|1|AA|A|608
4V6Y|1|AA|A|609
4V6Y|1|AA|U|610
4V6Y|1|AA|C|611
4V6Y|1|AA|C|612
*
4V6Y|1|AA|G|628
4V6Y|1|AA|A|629
4V6Y|1|AA|A|630
4V6Y|1|AA|C|631
4V6Y|1|AA|U|632
4V6Y|1|AA|G|633

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AH

30S ribosomal protein S8

Chain AP

30S ribosomal protein S16