IL_4V70_018

3D structure

PDB id

4V70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

ACAAUG*UGAU

Length

10 nucleotides

Bulged bases

4V70|1|AA|G|388

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V70_018 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.3147

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V70|1|AA|A|371
4V70|1|AA|C|372
4V70|1|AA|A|373
4V70|1|AA|A|374
4V70|1|AA|U|375
4V70|1|AA|G|376
*
4V70|1|AA|U|387
4V70|1|AA|G|388
4V70|1|AA|A|389
4V70|1|AA|U|390

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16