IL_4V71_034

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

4V71|1|AA|A|665

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V71_034 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1845

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

4V71|1|AA|U|662
4V71|1|AA|A|663
4V71|1|AA|G|664
4V71|1|AA|A|665
4V71|1|AA|G|666
*
4V71|1|AA|U|740
4V71|1|AA|G|741
4V71|1|AA|G|742
4V71|1|AA|A|743

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AO

30S ribosomal protein S15

Chain AR

30S ribosomal protein S18