IL_4V71_109

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V71|1|BA|C|1211

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V71_109 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.2579

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

4V71|1|BA|C|1208
4V71|1|BA|U|1209
4V71|1|BA|G|1210
4V71|1|BA|C|1211
4V71|1|BA|G|1212
4V71|1|BA|A|1213
4V71|1|BA|A|1214
4V71|1|BA|G|1215
*
4V71|1|BA|U|1234
4V71|1|BA|G|1235
4V71|1|BA|G|1236
4V71|1|BA|A|1237
4V71|1|BA|G|1238

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20