IL_4V71_198

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

GUGG*CUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V71_198 not in the Motif Atlas

Geometric match to IL_7R9F_001

Geometric discrepancy: 0.3493

The information below is about IL_7R9F_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59580.1

Basepair signature

cWW-cHW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V71|1|BA|G|2138
4V71|1|BA|U|2139
4V71|1|BA|G|2140
4V71|1|BA|G|2141
*
4V71|1|BA|C|2150
4V71|1|BA|U|2151
4V71|1|BA|G|2152
4V71|1|BA|C|2153

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S11

Chain B5

50S ribosomal protein L1