3D structure

PDB id
4V73 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5a)
Experimental method
ELECTRON MICROSCOPY
Resolution
15 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
4V73|1|AA|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V73_035 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.3806
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

4V73|1|AA|U|684
4V73|1|AA|G|685
4V73|1|AA|U|686
4V73|1|AA|A|687
4V73|1|AA|G|688
*
4V73|1|AA|C|699
4V73|1|AA|G|700
4V73|1|AA|U|701
4V73|1|AA|A|702
4V73|1|AA|G|703
4V73|1|AA|A|704
4V73|1|AA|G|705
4V73|1|AA|A|706

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AK
30S ribosomal protein S11
Chain BA
Large subunit ribosomal RNA; LSU rRNA
Chain BC
50S ribosomal protein L2

Coloring options:


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