3D structure

PDB id
4V74 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
4V74|1|AA|A|532, 4V74|1|AA|U|534, 4V74|1|AA|A|535
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V74_026 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.2418
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4V74|1|AA|G|515
4V74|1|AA|U|516
4V74|1|AA|G|517
4V74|1|AA|C|518
4V74|1|AA|C|519
4V74|1|AA|A|520
4V74|1|AA|G|521
*
4V74|1|AA|C|528
4V74|1|AA|G|529
4V74|1|AA|G|530
4V74|1|AA|U|531
4V74|1|AA|A|532
4V74|1|AA|A|533
4V74|1|AA|U|534
4V74|1|AA|A|535
4V74|1|AA|C|536

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain A1
Transfer RNA; tRNA
Chain A2
5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'
Chain AC
30S ribosomal protein S3
Chain AL
30S ribosomal protein S12

Coloring options:


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