IL_4V74_026

3D structure

PDB id

4V74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V74|1|AA|A|532, 4V74|1|AA|U|534, 4V74|1|AA|A|535

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V74_026 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.2418

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V74|1|AA|G|515
4V74|1|AA|U|516
4V74|1|AA|G|517
4V74|1|AA|C|518
4V74|1|AA|C|519
4V74|1|AA|A|520
4V74|1|AA|G|521
*
4V74|1|AA|C|528
4V74|1|AA|G|529
4V74|1|AA|G|530
4V74|1|AA|U|531
4V74|1|AA|A|532
4V74|1|AA|A|533
4V74|1|AA|U|534
4V74|1|AA|A|535
4V74|1|AA|C|536

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A1

Transfer RNA; tRNA

Chain A2

5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'

Chain AC

30S ribosomal protein S3

Chain AL

30S ribosomal protein S12