IL_4V74_134

3D structure

PDB id

4V74 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre5b)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

4V74|1|BA|A|1801, 4V74|1|BA|C|1816, 4V74|1|BA|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V74_134 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1967

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V74|1|BA|U|1798
4V74|1|BA|G|1799
4V74|1|BA|C|1800
4V74|1|BA|A|1801
4V74|1|BA|A|1802
4V74|1|BA|A|1803
4V74|1|BA|C|1804
*
4V74|1|BA|G|1813
4V74|1|BA|G|1814
4V74|1|BA|A|1815
4V74|1|BA|C|1816
4V74|1|BA|G|1817
4V74|1|BA|U|1818
4V74|1|BA|A|1819
4V74|1|BA|U|1820
4V74|1|BA|A|1821

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2