3D structure

PDB id
4V75 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic post-translocation state (post1)
Experimental method
ELECTRON MICROSCOPY
Resolution
12 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
4V75|1|AA|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V75_035 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.236
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

4V75|1|AA|U|684
4V75|1|AA|G|685
4V75|1|AA|U|686
4V75|1|AA|A|687
4V75|1|AA|G|688
*
4V75|1|AA|C|699
4V75|1|AA|G|700
4V75|1|AA|U|701
4V75|1|AA|A|702
4V75|1|AA|G|703
4V75|1|AA|A|704
4V75|1|AA|G|705
4V75|1|AA|A|706

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain A3
Transfer RNA; tRNA
Chain AK
30S ribosomal protein S11
Chain BA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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