IL_4V76_018

3D structure

PDB id

4V76 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

ACAAUG*UGAU

Length

10 nucleotides

Bulged bases

4V76|1|AA|G|388

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V76_018 not in the Motif Atlas

Geometric match to IL_4V88_408

Geometric discrepancy: 0.2685

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

4V76|1|AA|A|371
4V76|1|AA|C|372
4V76|1|AA|A|373
4V76|1|AA|A|374
4V76|1|AA|U|375
4V76|1|AA|G|376
*
4V76|1|AA|U|387
4V76|1|AA|G|388
4V76|1|AA|A|389
4V76|1|AA|U|390

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16