3D structure

PDB id
4V76 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
GUGCCAG*CGGUAAUAC
Length
16 nucleotides
Bulged bases
4V76|1|AA|A|532, 4V76|1|AA|U|534, 4V76|1|AA|A|535
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V76_024 not in the Motif Atlas
Geometric match to IL_4V88_415
Geometric discrepancy: 0.1704
The information below is about IL_4V88_415
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_54177.1
Basepair signature
cWW-cSW-tWH-L-R-L-R-tHS-cWW
Number of instances in this motif group
5

Unit IDs

4V76|1|AA|G|515
4V76|1|AA|U|516
4V76|1|AA|G|517
4V76|1|AA|C|518
4V76|1|AA|C|519
4V76|1|AA|A|520
4V76|1|AA|G|521
*
4V76|1|AA|C|528
4V76|1|AA|G|529
4V76|1|AA|G|530
4V76|1|AA|U|531
4V76|1|AA|A|532
4V76|1|AA|A|533
4V76|1|AA|U|534
4V76|1|AA|A|535
4V76|1|AA|C|536

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain A2
5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'
Chain AE
30S ribosomal protein S5
Chain AL
30S ribosomal protein S12

Coloring options:


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