IL_4V76_133

3D structure

PDB id

4V76 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2a)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

4V76|1|BA|A|1801, 4V76|1|BA|C|1816, 4V76|1|BA|U|1820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V76_133 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.1175

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

4V76|1|BA|U|1798
4V76|1|BA|G|1799
4V76|1|BA|C|1800
4V76|1|BA|A|1801
4V76|1|BA|A|1802
4V76|1|BA|A|1803
4V76|1|BA|C|1804
*
4V76|1|BA|G|1813
4V76|1|BA|G|1814
4V76|1|BA|A|1815
4V76|1|BA|C|1816
4V76|1|BA|G|1817
4V76|1|BA|U|1818
4V76|1|BA|A|1819
4V76|1|BA|U|1820
4V76|1|BA|A|1821

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2