IL_4V79_024

3D structure

PDB id

4V79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V79|1|AA|A|532, 4V79|1|AA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V79_024 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.3082

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V79|1|AA|G|515
4V79|1|AA|U|516
4V79|1|AA|G|517
4V79|1|AA|C|518
4V79|1|AA|C|519
4V79|1|AA|A|520
4V79|1|AA|G|521
*
4V79|1|AA|C|528
4V79|1|AA|G|529
4V79|1|AA|G|530
4V79|1|AA|U|531
4V79|1|AA|A|532
4V79|1|AA|A|533
4V79|1|AA|U|534
4V79|1|AA|A|535
4V79|1|AA|C|536

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A2

5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'

Chain AC

30S ribosomal protein S3

Chain AL

30S ribosomal protein S12