IL_4V79_105

3D structure

PDB id

4V79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post3b)

Experimental method

ELECTRON MICROSCOPY

Resolution

15 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

4V79|1|BA|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V79_105 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.2298

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

4V79|1|BA|C|1208
4V79|1|BA|U|1209
4V79|1|BA|G|1210
4V79|1|BA|C|1211
4V79|1|BA|G|1212
4V79|1|BA|A|1213
4V79|1|BA|A|1214
4V79|1|BA|G|1215
*
4V79|1|BA|U|1234
4V79|1|BA|G|1235
4V79|1|BA|G|1236
4V79|1|BA|A|1237
4V79|1|BA|G|1238

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20