IL_4V7A_028

3D structure

PDB id

4V7A (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal post-translocation complex (post4)

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

4V7A|1|AA|A|532, 4V7A|1|AA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7A_028 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.3568

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

4V7A|1|AA|G|515
4V7A|1|AA|U|516
4V7A|1|AA|G|517
4V7A|1|AA|C|518
4V7A|1|AA|C|519
4V7A|1|AA|A|520
4V7A|1|AA|G|521
*
4V7A|1|AA|C|528
4V7A|1|AA|G|529
4V7A|1|AA|G|530
4V7A|1|AA|U|531
4V7A|1|AA|A|532
4V7A|1|AA|A|533
4V7A|1|AA|U|534
4V7A|1|AA|A|535
4V7A|1|AA|C|536

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain A2

5'-R(*AP*CP*UP*AP*UP*GP*GP*UP*UP*UP*UP*UP*AP*UP*U)-3'

Chain AC

30S ribosomal protein S3

Chain AL

30S ribosomal protein S12