3D structure

PDB id
4V7C (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)
Experimental method
ELECTRON MICROSCOPY
Resolution
7.6 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
4V7C|1|AA|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V7C_031 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.1417
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

4V7C|1|AA|U|605
4V7C|1|AA|G|606
4V7C|1|AA|A|607
4V7C|1|AA|A|608
4V7C|1|AA|A|609
4V7C|1|AA|U|610
4V7C|1|AA|C|611
4V7C|1|AA|C|612
*
4V7C|1|AA|G|628
4V7C|1|AA|A|629
4V7C|1|AA|A|630
4V7C|1|AA|C|631
4V7C|1|AA|U|632
4V7C|1|AA|G|633

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AD
30S ribosomal protein S4
Chain AH
30S ribosomal protein S8
Chain AP
30S ribosomal protein S16
Chain AQ
30S ribosomal protein S17

Coloring options:


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