IL_4V7C_186

3D structure

PDB id

4V7C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

4V7C|1|BA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7C_186 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1627

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

4V7C|1|BA|C|2636
4V7C|1|BA|U|2637
4V7C|1|BA|G|2638
4V7C|1|BA|A|2639
4V7C|1|BA|G|2640
*
4V7C|1|BA|C|2774
4V7C|1|BA|G|2775
4V7C|1|BA|A|2776
4V7C|1|BA|G|2777
4V7C|1|BA|A|2778
4V7C|1|BA|U|2779
4V7C|1|BA|G|2780
4V7C|1|BA|A|2781
4V7C|1|BA|G|2782

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BE

50S ribosomal protein L3

Chain BL

50S ribosomal protein L13