IL_4V7D_185

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

GAAG*CGGACC

Length

10 nucleotides

Bulged bases

4V7D|1|BA|A|1257, 4V7D|1|BA|A|1280, 4V7D|1|BA|C|1281

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_185 not in the Motif Atlas

Homologous match to IL_5J7L_055

Geometric discrepancy: 0.1699

The information below is about IL_5J7L_055

Detailed Annotation

180 degree turn

Broad Annotation

No text annotation

Motif group

IL_11344.2

Basepair signature

cWW-cSS-L-cWW

Number of instances in this motif group

2

Unit IDs

4V7D|1|BA|G|1255
4V7D|1|BA|A|1256
4V7D|1|BA|A|1257
4V7D|1|BA|G|1258
*
4V7D|1|BA|C|1277
4V7D|1|BA|G|1278
4V7D|1|BA|G|1279
4V7D|1|BA|A|1280
4V7D|1|BA|C|1281
4V7D|1|BA|C|1282

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BC

30S ribosomal protein S3

Chain BJ

30S ribosomal protein S10

Chain BN

30S ribosomal protein S14