IL_4V7D_220

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CCGUG*CCGG

Length

9 nucleotides

Bulged bases

4V7D|1|AA|U|2068

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_220 not in the Motif Atlas

Geometric match to IL_5EW4_002

Geometric discrepancy: 0.2533

The information below is about IL_5EW4_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

4V7D|1|AA|C|2065
4V7D|1|AA|C|2066
4V7D|1|AA|G|2067
4V7D|1|AA|U|2068
4V7D|1|AA|G|2069
*
4V7D|1|AA|C|2442
4V7D|1|AA|C|2443
4V7D|1|AA|G|2444
4V7D|1|AA|G|2445

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L4

Chain AO

50S ribosomal protein L15

Chain BV

Transfer RNA; tRNA