IL_4V7D_221

3D structure

PDB id

4V7D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure)

Experimental method

ELECTRON MICROSCOPY

Resolution

7.6 Å

Loop

Sequence

CCUUGAUGUGUAGGAUAG*CCUUUAAUG

Length

27 nucleotides

Bulged bases

4V7D|1|AA|U|2111, 4V7D|1|AA|A|2114, 4V7D|1|AA|U|2118, 4V7D|1|AA|A|2119

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7D_221 not in the Motif Atlas

Homologous match to IL_5J7L_397

Geometric discrepancy: 0.331

The information below is about IL_5J7L_397

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54737.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R-L-R

Number of instances in this motif group

1

Unit IDs

4V7D|1|AA|C|2103
4V7D|1|AA|C|2104
4V7D|1|AA|U|2105
4V7D|1|AA|U|2106
4V7D|1|AA|G|2107
4V7D|1|AA|A|2108
4V7D|1|AA|U|2109
4V7D|1|AA|G|2110
4V7D|1|AA|U|2111
4V7D|1|AA|G|2112
4V7D|1|AA|U|2113
4V7D|1|AA|A|2114
4V7D|1|AA|G|2115
4V7D|1|AA|G|2116
4V7D|1|AA|A|2117
4V7D|1|AA|U|2118
4V7D|1|AA|A|2119
4V7D|1|AA|G|2120
*
4V7D|1|AA|C|2178
4V7D|1|AA|C|2179
4V7D|1|AA|U|2180
4V7D|1|AA|U|2181
4V7D|1|AA|U|2182
4V7D|1|AA|A|2183
4V7D|1|AA|A|2184
4V7D|1|AA|U|2185
4V7D|1|AA|G|2186

Current chains

Chain AA

23S ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L1

Chain BG

30S ribosomal protein S7

Chain BW

Transfer RNA; tRNA