IL_4V7E_032
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 4V7E|1|Aa|A|936, 4V7E|1|Aa|G|940
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_032 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.1569
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V7E|1|Aa|G|808
4V7E|1|Aa|A|809
4V7E|1|Aa|A|810
4V7E|1|Aa|A|811
4V7E|1|Aa|G|812
*
4V7E|1|Aa|C|934
4V7E|1|Aa|U|935
4V7E|1|Aa|A|936
4V7E|1|Aa|G|937
4V7E|1|Aa|U|938
4V7E|1|Aa|A|939
4V7E|1|Aa|G|940
4V7E|1|Aa|C|941
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CC
- 60S ribosomal protein L4
- Chain CL
- 60S ribosomal protein L13E
- Chain CN
- 60S ribosomal protein L15E
- Chain Ca
- 60S ribosomal protein L15
- Chain Cj
- 60S ribosomal protein L37E
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