IL_4V7E_042
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CAGGUAA*UAAAUAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_042 not in the Motif Atlas
- Geometric match to IL_5TBW_038
- Geometric discrepancy: 0.1294
- The information below is about IL_5TBW_038
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93830.3
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
4V7E|1|Aa|C|995
4V7E|1|Aa|A|996
4V7E|1|Aa|G|997
4V7E|1|Aa|G|998
4V7E|1|Aa|U|999
4V7E|1|Aa|A|1000
4V7E|1|Aa|A|1001
*
4V7E|1|Aa|U|1056
4V7E|1|Aa|A|1057
4V7E|1|Aa|A|1058
4V7E|1|Aa|A|1059
4V7E|1|Aa|U|1060
4V7E|1|Aa|A|1061
4V7E|1|Aa|G|1062
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ab
- 5S ribosomal RNA; 5S rRNA
- Chain CD
- 60S ribosomal protein L18
- Chain CF
- 60S ribosomal protein L30
- Chain CI
- 60S ribosomal protein L16
- Chain CT
- 60S ribosomal protein L21E
- Chain Cb
- 60S ribosomal protein L29E
Coloring options: