IL_4V7E_056
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CUAACCUAG*CUGAAG
- Length
- 15 nucleotides
- Bulged bases
- 4V7E|1|Aa|U|1196, 4V7E|1|Aa|G|1320, 4V7E|1|Aa|A|1322
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_056 not in the Motif Atlas
- Homologous match to IL_5TBW_051
- Geometric discrepancy: 0.1929
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4V7E|1|Aa|C|1190
4V7E|1|Aa|U|1191
4V7E|1|Aa|A|1192
4V7E|1|Aa|A|1193
4V7E|1|Aa|C|1194
4V7E|1|Aa|C|1195
4V7E|1|Aa|U|1196
4V7E|1|Aa|A|1197
4V7E|1|Aa|G|1198
*
4V7E|1|Aa|C|1318
4V7E|1|Aa|U|1319
4V7E|1|Aa|G|1320
4V7E|1|Aa|A|1321
4V7E|1|Aa|A|1322
4V7E|1|Aa|G|1323
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CH
- 60S ribosomal protein L6
- Chain CM
- 60S ribosomal protein L14E
- Chain CO
- 60S ribosomal protein L13
- Chain CS
- 60S ribosomal protein L20
- Chain Cm
- 60S ribosomal protein L40E
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