IL_4V7E_063

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

4V7E|1|Aa|G|1432

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_063 not in the Motif Atlas

Homologous match to IL_5TBW_057

Geometric discrepancy: 0.1626

The information below is about IL_5TBW_057

Detailed Annotation

Isolated cWS basepair

Broad Annotation

Isolated cWS basepair

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

4V7E|1|Aa|C|1380
4V7E|1|Aa|G|1381
4V7E|1|Aa|C|1382
*
4V7E|1|Aa|G|1431
4V7E|1|Aa|G|1432
4V7E|1|Aa|U|1433
4V7E|1|Aa|G|1434

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ac

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

60S ribosomal protein L4

Chain Ce

60S ribosomal protein L32E