IL_4V7E_067

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_067 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1319

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

4V7E|1|Aa|G|1447
4V7E|1|Aa|U|1448
4V7E|1|Aa|A|1449
4V7E|1|Aa|G|1450
4V7E|1|Aa|U|1451
4V7E|1|Aa|A|1452
4V7E|1|Aa|G|1453
*
4V7E|1|Aa|C|2353
4V7E|1|Aa|G|2354
4V7E|1|Aa|A|2355
4V7E|1|Aa|A|2356
4V7E|1|Aa|A|2357
4V7E|1|Aa|C|2358

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain Ac

5.8S ribosomal RNA; 5.8S rRNA

Chain CC

60S ribosomal protein L4

Chain CP

60S ribosomal protein L22