IL_4V7E_069
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- CUAAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 4V7E|1|Aa|A|1585, 4V7E|1|Aa|A|1586
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_069 not in the Motif Atlas
- Homologous match to IL_5TBW_063
- Geometric discrepancy: 0.2433
- The information below is about IL_5TBW_063
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
4V7E|1|Aa|C|1535
4V7E|1|Aa|U|1536
4V7E|1|Aa|A|1537
4V7E|1|Aa|A|1538
4V7E|1|Aa|G|1539
*
4V7E|1|Aa|C|1582
4V7E|1|Aa|G|1583
4V7E|1|Aa|A|1584
4V7E|1|Aa|A|1585
4V7E|1|Aa|A|1586
4V7E|1|Aa|G|1587
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain Ac
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CA
- 60S ribosomal protein L2
- Chain Cg
- 60S ribosomal protein L34E
- Chain Cj
- 60S ribosomal protein L37E
- Chain Cl
- 60S ribosomal protein L39E
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