IL_4V7E_072

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGCG*CCGUUC

Length

10 nucleotides

Bulged bases

4V7E|1|Aa|U|1817

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_072 not in the Motif Atlas

Homologous match to IL_5TBW_065

Geometric discrepancy: 0.5371

The information below is about IL_5TBW_065

Detailed Annotation

Multiple bulged bases with near cWW

Broad Annotation

Multiple bulged bases with near cWW

Motif group

IL_58686.2

Basepair signature

cWW-cWW-L-R-cSH-cWW

Number of instances in this motif group

6

Unit IDs

4V7E|1|Aa|G|1621
4V7E|1|Aa|G|1622
4V7E|1|Aa|C|1623
4V7E|1|Aa|G|1624
*
4V7E|1|Aa|C|1813
4V7E|1|Aa|C|1814
4V7E|1|Aa|G|1815
4V7E|1|Aa|U|1816
4V7E|1|Aa|U|1817
4V7E|1|Aa|C|1818

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CZ

60S ribosomal protein L27E

Chain Cg

60S ribosomal protein L34E

Chain Ck

60S ribosomal protein L38E