IL_4V7E_074

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAAGU*AGGAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_074 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.1973

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

4V7E|1|Aa|G|1642
4V7E|1|Aa|A|1643
4V7E|1|Aa|A|1644
4V7E|1|Aa|G|1645
4V7E|1|Aa|U|1646
*
4V7E|1|Aa|A|1802
4V7E|1|Aa|G|1803
4V7E|1|Aa|G|1804
4V7E|1|Aa|A|1805
4V7E|1|Aa|C|1806

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CA

60S ribosomal protein L2

Chain CZ

60S ribosomal protein L27E

Chain Cg

60S ribosomal protein L34E