IL_4V7E_082
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UGGAAAC*GGAGGUA
- Length
- 14 nucleotides
- Bulged bases
- 4V7E|1|Aa|A|1714, 4V7E|1|Aa|A|1727
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_082 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.391
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V7E|1|Aa|U|1709
4V7E|1|Aa|G|1710
4V7E|1|Aa|G|1711
4V7E|1|Aa|A|1712
4V7E|1|Aa|A|1713
4V7E|1|Aa|A|1714
4V7E|1|Aa|C|1715
*
4V7E|1|Aa|G|1725
4V7E|1|Aa|G|1726
4V7E|1|Aa|A|1727
4V7E|1|Aa|G|1728
4V7E|1|Aa|G|1729
4V7E|1|Aa|U|1730
4V7E|1|Aa|A|1731
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain BN
- 40S ribosomal protein S15
- Chain CR
- 60S ribosomal protein L19E
- Chain CZ
- 60S ribosomal protein L27E
- Chain Cc
- 60S ribosomal protein L30E
- Chain Cp
- 60S ribosomal protein L43E
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