IL_4V7E_083
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- AACAAUG*CUAU
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_083 not in the Motif Atlas
- Homologous match to IL_5TBW_074
- Geometric discrepancy: 0.2167
- The information below is about IL_5TBW_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_49460.3
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
4V7E|1|Aa|A|1879
4V7E|1|Aa|A|1880
4V7E|1|Aa|C|1881
4V7E|1|Aa|A|1882
4V7E|1|Aa|A|1883
4V7E|1|Aa|U|1884
4V7E|1|Aa|G|1885
*
4V7E|1|Aa|C|2345
4V7E|1|Aa|U|2346
4V7E|1|Aa|A|2347
4V7E|1|Aa|U|2348
Current chains
- Chain Aa
- 60S ribosomal RNA
Nearby chains
- Chain CB
- 60S ribosomal protein L3
- Chain CP
- 60S ribosomal protein L22
- Chain Cd
- 60S ribosomal protein L31E
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