IL_4V7E_121

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CUGA*UACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_121 not in the Motif Atlas

Homologous match to IL_5TBW_100

Geometric discrepancy: 0.1495

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4V7E|1|Aa|C|2721
4V7E|1|Aa|U|2722
4V7E|1|Aa|G|2723
4V7E|1|Aa|A|2724
*
4V7E|1|Aa|U|2738
4V7E|1|Aa|A|2739
4V7E|1|Aa|C|2740
4V7E|1|Aa|G|2741

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CQ

60S ribosomal protein L18E

Chain CT

60S ribosomal protein L21E

Chain Cb

60S ribosomal protein L29E

Chain Co

60S ribosomal protein L44E