IL_4V7E_136

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGAU*AGCAUG

Length

10 nucleotides

Bulged bases

4V7E|1|Aa|A|3143, 4V7E|1|Aa|U|3144

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_136 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.2251

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4V7E|1|Aa|C|3005
4V7E|1|Aa|G|3006
4V7E|1|Aa|A|3007
4V7E|1|Aa|U|3008
*
4V7E|1|Aa|A|3140
4V7E|1|Aa|G|3141
4V7E|1|Aa|C|3142
4V7E|1|Aa|A|3143
4V7E|1|Aa|U|3144
4V7E|1|Aa|G|3145

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CO

60S ribosomal protein L13

Chain CP

60S ribosomal protein L22