IL_4V7E_140

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CAAUU*ACCG

Length

9 nucleotides

Bulged bases

4V7E|1|Aa|C|3093, 4V7E|1|Aa|C|3094

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_140 not in the Motif Atlas

Homologous match to IL_8C3A_126

Geometric discrepancy: 0.1787

The information below is about IL_8C3A_126

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

Major groove minor groove platform with tHH

Motif group

IL_14592.1

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

4V7E|1|Aa|C|3048
4V7E|1|Aa|A|3049
4V7E|1|Aa|A|3050
4V7E|1|Aa|U|3051
4V7E|1|Aa|U|3052
*
4V7E|1|Aa|A|3092
4V7E|1|Aa|C|3093
4V7E|1|Aa|C|3094
4V7E|1|Aa|G|3095

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CV

60S ribosomal protein L14

Chain CW

60S ribosomal protein L24E