IL_4V7E_141

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UCAUCG*CGAAG

Length

11 nucleotides

Bulged bases

4V7E|1|Aa|A|3057, 4V7E|1|Aa|C|3059

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_141 not in the Motif Atlas

Homologous match to IL_8C3A_127

Geometric discrepancy: 0.182

The information below is about IL_8C3A_127

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

4V7E|1|Aa|U|3055
4V7E|1|Aa|C|3056
4V7E|1|Aa|A|3057
4V7E|1|Aa|U|3058
4V7E|1|Aa|C|3059
4V7E|1|Aa|G|3060
*
4V7E|1|Aa|C|3085
4V7E|1|Aa|G|3086
4V7E|1|Aa|A|3087
4V7E|1|Aa|A|3088
4V7E|1|Aa|G|3089

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain CW

60S ribosomal protein L24E

Chain Cd

60S ribosomal protein L31E