IL_4V7E_143

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

AUUAU*AGAAU

Length

10 nucleotides

Bulged bases

4V7E|1|Aa|A|3131

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_143 not in the Motif Atlas

Homologous match to IL_5TBW_120

Geometric discrepancy: 0.1399

The information below is about IL_5TBW_120

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_89002.4

Basepair signature

cWW-tWH-cWW-L-cWW-tHS

Number of instances in this motif group

15

Unit IDs

4V7E|1|Aa|A|3104
4V7E|1|Aa|U|3105
4V7E|1|Aa|U|3106
4V7E|1|Aa|A|3107
4V7E|1|Aa|U|3108
*
4V7E|1|Aa|A|3128
4V7E|1|Aa|G|3129
4V7E|1|Aa|A|3130
4V7E|1|Aa|A|3131
4V7E|1|Aa|U|3132

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CH

60S ribosomal protein L6

Chain CO

60S ribosomal protein L13

Chain Cm

60S ribosomal protein L40E