IL_4V7E_154

3D structure

PDB id

4V7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GCA*UCCAGU

Length

9 nucleotides

Bulged bases

4V7E|1|Aa|G|3369

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V7E_154 not in the Motif Atlas

Geometric match to IL_5TBW_132

Geometric discrepancy: 0.1711

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

4V7E|1|Aa|G|3320
4V7E|1|Aa|C|3321
4V7E|1|Aa|A|3322
*
4V7E|1|Aa|U|3365
4V7E|1|Aa|C|3366
4V7E|1|Aa|C|3367
4V7E|1|Aa|A|3368
4V7E|1|Aa|G|3369
4V7E|1|Aa|U|3370

Current chains

Chain Aa

60S ribosomal RNA

Nearby chains

Chain CB

60S ribosomal protein L3

Chain Cd

60S ribosomal protein L31E