IL_4V7E_167
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GAUG*CUC
- Length
- 7 nucleotides
- Bulged bases
- 4V7E|1|Ab|U|84
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_167 not in the Motif Atlas
- Geometric match to IL_5F5F_003
- Geometric discrepancy: 0.1586
- The information below is about IL_5F5F_003
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.2
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 58
Unit IDs
4V7E|1|Ab|G|82
4V7E|1|Ab|A|83
4V7E|1|Ab|U|84
4V7E|1|Ab|G|85
*
4V7E|1|Ab|C|92
4V7E|1|Ab|U|93
4V7E|1|Ab|C|94
Current chains
- Chain Ab
- 5S ribosomal RNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain CF
- 60S ribosomal protein L30
- Chain CI
- 60S ribosomal protein L16
- Chain CS
- 60S ribosomal protein L20
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