IL_4V7E_178
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GUUAUAGU*AAUUUC
- Length
- 14 nucleotides
- Bulged bases
- 4V7E|1|Ad|A|115
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_178 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.377
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V7E|1|Ad|G|110
4V7E|1|Ad|U|111
4V7E|1|Ad|U|112
4V7E|1|Ad|A|113
4V7E|1|Ad|U|114
4V7E|1|Ad|A|115
4V7E|1|Ad|G|116
4V7E|1|Ad|U|117
*
4V7E|1|Ad|A|304
4V7E|1|Ad|A|305
4V7E|1|Ad|U|306
4V7E|1|Ad|U|307
4V7E|1|Ad|U|308
4V7E|1|Ad|C|309
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain BE
- 40S ribosomal protein S4E
- Chain BL
- 40S ribosomal protein S17
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