IL_4V7E_186
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- UAUCAA*UGGUGACG
- Length
- 14 nucleotides
- Bulged bases
- 4V7E|1|Ad|U|317, 4V7E|1|Ad|U|355
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_186 not in the Motif Atlas
- Homologous match to IL_4V88_402
- Geometric discrepancy: 0.152
- The information below is about IL_4V88_402
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_45067.5
- Basepair signature
- cWW-tSH-tSS-tHS-R-cWW-cWW-R
- Number of instances in this motif group
- 16
Unit IDs
4V7E|1|Ad|U|315
4V7E|1|Ad|A|316
4V7E|1|Ad|U|317
4V7E|1|Ad|C|318
4V7E|1|Ad|A|319
4V7E|1|Ad|A|320
*
4V7E|1|Ad|U|352
4V7E|1|Ad|G|353
4V7E|1|Ad|G|354
4V7E|1|Ad|U|355
4V7E|1|Ad|G|356
4V7E|1|Ad|A|357
4V7E|1|Ad|C|358
4V7E|1|Ad|G|359
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain Aa
- Large subunit ribosomal RNA; LSU rRNA
- Chain BL
- 40S ribosomal protein S17
- Chain BX
- 40S ribosomal protein S12
Coloring options: