IL_4V7E_197
3D structure
- PDB id
- 4V7E (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Model of the small subunit RNA based on a 5.5 A cryo-EM map of Triticum aestivum translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.5 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 4V7E|1|Ad|A|583, 4V7E|1|Ad|U|585, 4V7E|1|Ad|U|586
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V7E_197 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.2305
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
4V7E|1|Ad|G|566
4V7E|1|Ad|U|567
4V7E|1|Ad|G|568
4V7E|1|Ad|C|569
4V7E|1|Ad|C|570
4V7E|1|Ad|A|571
4V7E|1|Ad|G|572
*
4V7E|1|Ad|C|579
4V7E|1|Ad|G|580
4V7E|1|Ad|G|581
4V7E|1|Ad|U|582
4V7E|1|Ad|A|583
4V7E|1|Ad|A|584
4V7E|1|Ad|U|585
4V7E|1|Ad|U|586
4V7E|1|Ad|C|587
Current chains
- Chain Ad
- 18S ribosomal RNA
Nearby chains
- Chain Af
- 5'-R(*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3'
- Chain BD
- 40S ribosomal protein S3
- Chain BX
- 40S ribosomal protein S12
- Chain Be
- 40S ribosomal protein S30E
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